PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG732900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 410aa    MW: 46212.8 Da    PI: 5.4725
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG732900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.35.2e-26195248155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Pavir.5KG732900.1.p 195 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 248
                          68*******************.9*******************************8 PP
2Response_reg80.94.2e-27151231109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k  y ev+++  ++ al++l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + +
  Pavir.5KG732900.1.p  15 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLASVALQILRERRnkFDIVISDVNMPDMDGFRLLEHIGLEM-DLPVIMMSIDGETSRVMK 102
                          89*********************.***************888888**********************6654.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ ++el++
  Pavir.5KG732900.1.p 103 GVQHGACDYLLKPVRMKELRN 123
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-4312144No hitNo description
SuperFamilySSF521725.98E-3512135IPR011006CheY-like superfamily
SMARTSM004484.0E-3113125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41614129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2415124IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.04E-2816128No hitNo description
SuperFamilySSF466891.97E-18192252IPR009057Homeodomain-like
PROSITE profilePS512949.161192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-28194253IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-23195248IPR006447Myb domain, plants
PfamPF002495.7E-8197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MALADATGFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVT TCGLASVALQ ILRERRNKFD  60
IVISDVNMPD MDGFRLLEHI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE  120
LRNIWQHVYR KKMHEVKEIE GNDSCDDLQI FRNGCEGLEE RGLFMRAESD TMRKRKDVDK  180
DHIDQDSSDG ATVKKARVVW SVDLHQKFVN AVNQIGFDKV GPKKILDLMN VPGLTRENVA  240
SHLQKYRLYL SRLQKQNEER IMGAARQDFS HKGPSDNLNL RNSFQEQPGN GASGFQHSSQ  300
KIQAQNNMLD PHLEDTKIVV PLKVPDKSGT PARNQAPSLI SEEASTICGT DLACLPDDLS  360
GYQLGLNGID LFQCNDAMML HGLQNNWYDD PELSSEIMEF PLLDGCLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17194253463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG732900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9747740.0EU974774.1 Zea mays clone 457889 two-component response regulator ARR11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817738.10.0two-component response regulator ORR26
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A3L6SU070.0A0A3L6SU07_PANMI; Two-component response regulator
STRINGPavir.Ea03527.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-115response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]