PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG698900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 700aa    MW: 72653.1 Da    PI: 6.9695
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG698900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.4e-15271330155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pavir.5KG698900.1.p 271 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 330
                          57*******************666664478446*************************98 PP
2AP246.78e-15373424155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pavir.5KG698900.1.p 373 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 424
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-12271330IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17271340IPR016177DNA-binding domain
CDDcd000185.65E-20271340No hitNo description
SMARTSM003807.2E-30272344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-16272339IPR001471AP2/ERF domain
PROSITE profilePS5103219.23272338IPR001471AP2/ERF domain
PRINTSPR003673.7E-6273284IPR001471AP2/ERF domain
PfamPF008479.9E-10373424IPR001471AP2/ERF domain
CDDcd000183.21E-22373434No hitNo description
SuperFamilySSF541711.11E-17373434IPR016177DNA-binding domain
SMARTSM003801.5E-33374438IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18374433IPR001471AP2/ERF domain
PROSITE profilePS5103219.045374432IPR001471AP2/ERF domain
PRINTSPR003673.7E-6414434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQDLPPS QTDSTLISAA ATDEVSGDVC FNIPQDWGMR GSELSALVSE  60
PKLEDFLGGI NFSEQHHKAN LNVIPSSSST CYASSGASSA GYHQLYHHPS SALHFADSVM  120
VASSAGVHDG GAMISAATAS GGAGAAGANG GSIGLSMIKN WLRSQPAPAP PQPRVAVAEG  180
AQAAQGLSLS MNMAGTQGAG MPFLAGERGR APESASTSAQ GGAVAARKED SGGSGGAGAL  240
VTVSTDTGGS GGASAETAAR KTVDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT  300
RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFPVS NYEKELEEMK HMTRQEFVAS  360
LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  420
KFRGLNAVTN FDMSRYDVKS ILDSSALPIG SAAKRLKEAE AAASAQHHAG VVSYDVGRIA  480
SQLGDGGALA AYGAHYHAAA AAWPTIAFQP GAAAAGLYHP YAQPLRGWCK QEQDYAVIAA  540
AHSLQELNHL NLGAGAHDFF SAGQAAMHGL GSIDNSSLEH STGSNSVVYN GVGDSNGGAV  600
GGGYMMPTSA AAAATTTAMV SHEQVHARAQ GDHDESSKRA AHMGYESYLV NAEAAYGGGR  660
MPSWTTASAP PVAAAASSND NMAGVGHGGA QLFSVWNDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG698900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818612.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2T8IJ050.0A0A2T8IJ05_9POAL; Uncharacterized protein
STRINGPavir.J01327.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-121AP2 family protein