PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG682400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 465aa MW: 47934.6 Da PI: 9.5583

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG682400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg++F ++ H+r+H Pavir.5KG682400.1.p 117 FACHVCGRRFHSPKAVDGHMRVH 139 78*******************99 PP
2	zf-C2H2	11.5	0.00091	299	317	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C+ Cgks+s++ L H Pavir.5KG682400.1.p 299 YSCKLCGKSYSSHQGLGGH 317 99*********99888666 PP
3	zf-C2H2	14.4	0.00011	360	382	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F++ L H+r+H Pavir.5KG682400.1.p 360 HECRKCHKVFPTGVALGGHMRMH 382 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.24	117	144	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.03E-7	117	139	No hit	No description
Pfam	PF13894	0.0013	117	139	No hit	No description
SMART	SM00355	0.0023	117	139	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.03E-7	294	321	No hit	No description
PROSITE profile	PS50157	10.221	299	326	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.8E-4	299	321	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.95	299	321	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	301	321	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.34E-6	357	388	No hit	No description
Pfam	PF13912	2.7E-9	360	383	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.471	360	387	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	360	382	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	362	382	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MGSDSSSRRR RPLRDLDGGG GGDIEEGEYV PEAPESDDSG AGGDEELCRL QRRLEGELGR 60 RVSWLEVVMA SGRVAVPPRL APPSSESDGT ISDGGRSPSA VSSCVMISAT GASAPRFACH 120 VCGRRFHSPK AVDGHMRVHG NGRQQVPLAV SGGWAATGRR GWTGGGKPSV SASLNSESTD 180 NHSTATVAEP IPMAIAMPAT PVVSTGTNLS GEESSSASAQ PMHYELHVAT VVTVANPSST 240 GVVIHQHAAP PPSAAAGQAR PVHQVAAPRP AARQAQLVRR GPLAPPRAAR PAPQPAREYS 300 CKLCGKSYSS HQGLGGHAAG HKNRQKEAAA AAAAAMMGQE DGGAFLAAFR RGRRAAQPPH 360 ECRKCHKVFP TGVALGGHMR MHYTGPPIVH RKNKKQRGLV SEADLRLALS TATEAPPQPA 420 AAVAGRVRLF GIDIGSQVQA PPPPPPEDQG SGTAEGSSSA GEQD*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MGSDSSSRRR RPLRDLDGGG GGDIEEGEYV PEAPESDDSG AGGDEELCRL QRRLEGELGR  60
RVSWLEVVMA SGRVAVPPRL APPSSESDGT ISDGGRSPSA VSSCVMISAT GASAPRFACH  120
VCGRRFHSPK AVDGHMRVHG NGRQQVPLAV SGGWAATGRR GWTGGGKPSV SASLNSESTD  180
NHSTATVAEP IPMAIAMPAT PVVSTGTNLS GEESSSASAQ PMHYELHVAT VVTVANPSST  240
GVVIHQHAAP PPSAAAGQAR PVHQVAAPRP AARQAQLVRR GPLAPPRAAR PAPQPAREYS  300
CKLCGKSYSS HQGLGGHAAG HKNRQKEAAA AAAAAMMGQE DGGAFLAAFR RGRRAAQPPH  360
ECRKCHKVFP TGVALGGHMR MHYTGPPIVH RKNKKQRGLV SEADLRLALS TATEAPPQPA  420
AAVAGRVRLF GIDIGSQVQA PPPPPPEDQG SGTAEGSSSA GEQD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG682400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682476.1	1e-141	replication initiator 1-like
TrEMBL	A0A3L6SPK2	1e-171	A0A3L6SPK2_PANMI; Uncharacterized protein
STRING	Pavir.Ea03590.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7612	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	7e-11	zinc-finger protein 2

Link Out ? help Back to Top
Phytozome	Pavir.5KG682400.1.p