PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG675300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 572aa    MW: 63511.4 Da    PI: 4.7202
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG675300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4225e-1292025712374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cA+a+s+ +  +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P++
  Pavir.5KG675300.1.p 202 KQLLFDCATALSEYNIDEAQAIISDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGNGIYKALTCKDPP---TLYQLSAMQILFEICPCF 288
                          589*****************************************************************9...89999************* PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          ++++++a  aIlea +geer+HiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+++A+ +g++fef+
  Pavir.5KG675300.1.p 289 RLGFMAASYAILEACKGEERLHIIDFDINQGSQYITLIQFLKNNANKPQHLRITGVDDPETVqrPIGGLKVIGKRLEQLAQDCGLSFEFR 378
                          ************************************************************99878899********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + v  +l d+++ +L+++pgEalaVn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yy+alfd
  Pavir.5KG675300.1.p 379 A-VGANLGDVTPAMLDCRPGEALAVNFAFQLHHLPDESVSIVNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYAALFD 467
                          *.799************************************************************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF+p p+++++ + +k++l+ + ++ y+ ee++g l 
  Pavir.5KG675300.1.p 468 SLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTPCPFNSNVISGIKSILKSYCDR-YKFEEDHGGLH 556
                          ****************************************************************************66.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          +gW +++L++ SaW+
  Pavir.5KG675300.1.p 557 FGWGKKTLIVSSAWQ 571
                          **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.455175552IPR005202Transcription factor GRAS
PfamPF035141.7E-126202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSFVRRADPS TAYTDNFYIH KFAAPSSNFA VRRFSSDTQL FRYGPEPYNG EYGHMGFTGS  60
PSAAFQNSFY SQQASLTPYP LNADGRSLSV ADTQSNSCSD AAKESPAASN VSQQNSQSVS  120
DTQSSEIEVE FDEDEIRLKL QELEHALLED GDDILFEISQ ASSINDEWVD PMRNVLLPNS  180
PKESESSISC AVSNSRATRT PKQLLFDCAT ALSEYNIDEA QAIISDLRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGNGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAASYAIL  300
EACKGEERLH IIDFDINQGS QYITLIQFLK NNANKPQHLR ITGVDDPETV QRPIGGLKVI  360
GKRLEQLAQD CGLSFEFRAV GANLGDVTPA MLDCRPGEAL AVNFAFQLHH LPDESVSIVN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYAALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFTPCPFNSN VISGIKSILK  540
SYCDRYKFEE DHGGLHFGWG KKTLIVSSAW Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6220857026378Protein SCARECROW
5b3h_A7e-6220857025377Protein SCARECROW
5b3h_D7e-6220857025377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.116080.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG675300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2S3HPD70.0A0A2S3HPD7_9POAL; Uncharacterized protein
STRINGPavir.Ea03635.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]