PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG674500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 427aa    MW: 47336.2 Da    PI: 4.6445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG674500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.21.4e-4461441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee..........vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrkn 75 
                          lppGfrFhPtd el ++yLk+k+ gkk                  +i+ev++yk+  wdLp k ++++++ ewyfF++rdkkya+ +r+n
  Pavir.5KG674500.1.p   6 LPPGFRFHPTDLELCSYYLKRKIMGKKllvE---ArpgqtsglveAISEVELYKYAFWDLPdKsCLQSRDMEWYFFCPRDKKYANCSRTN 92 
                          79*************************6540...345566666658**************96358888999******************* PP

                  NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          r+t  g+Wk+tgkd++++  +++ vg+kk+L+f++g+ap+g +tdWvm eyr+
  Pavir.5KG674500.1.p  93 RSTPFGFWKSTGKDRTIVL-NTRIVGMKKSLIFHEGKAPRGDRTDWVMYEYRM 144
                          *******************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-523167IPR003441NAC domain
PROSITE profilePS5100551.6456167IPR003441NAC domain
PfamPF023651.8E-247144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDLELC SYYLKRKIMG KKLLVEARPG QTSGLVEAIS EVELYKYAFW  60
DLPDKSCLQS RDMEWYFFCP RDKKYANCSR TNRSTPFGFW KSTGKDRTIV LNTRIVGMKK  120
SLIFHEGKAP RGDRTDWVMY EYRMEDSELD VAGFSKDAYV LCKIFKKSGL GPKIGEHYGA  180
SFNEGEWDNV NTEAVFPLMP CLSSEVVGAT NKPPCQLTVA SADGLPFEFS TSSITAIDEV  240
HAHTLRHNGS EMVTANHASD ALDACDPTEF GLPGLPDISE AEAQALEMNS DYCCNELARL  300
VKSGVSTANS LSPSYVNTEC LNPPMIFGIG VVDDYLEIND LFPPGETASF KLPAPESQFH  360
QYPLEQCPHN ELNRPQYDNE TEGALAASSE ACHFLPPNSC SVHDISVDYN TCSTNLMWSD  420
CSNSTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44216811169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.61741e-173callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG674500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0535681e-123HM053568.1 Setaria italica NAC transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814465.10.0NAC domain-containing protein 68-like
RefseqXP_025814466.10.0NAC domain-containing protein 68-like
RefseqXP_025814467.10.0NAC domain-containing protein 68-like
RefseqXP_025814468.10.0NAC domain-containing protein 68-like
TrEMBLA0A3L6SJK20.0A0A3L6SJK2_PANMI; NAC domain-containing protein 82
STRINGPavir.J18990.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-72NAC domain containing protein 103