|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5KG668900.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 270aa MW: 29122.2 Da PI: 9.3981 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG668900.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl
Pavir.5KG668900.1.p 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
79******************************99************97 PP
|
2 | Myb_DNA-binding | 54.3 | 3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T ++del+++++++lG++ W++Ia ++ gRt++++k++w+++
Pavir.5KG668900.1.p 67 RGNFTDDDDELIIKLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDDDELIIK LHALLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPQTHRPLS GGSAAAASGL TTSSTAGFPS PSPAPRPARP VIAIPPNVMF ARPTPSEDGQ 180 SSSGGSTDAP RCPDLNLDLD LSVGPPCSPP KTPAAAASTP TSQQQQQQQR ATICLCYHLG 240 VRGGEACSCK TALPAGFRFL RPLEEGRYI*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT035447 | 0.0 | BT035447.1 Zea mays full-length cDNA clone ZM_BFb0063G11 mRNA, complete cds. |
GenBank | FP099732 | 0.0 | FP099732.1 Phyllostachys edulis cDNA clone: bphylf047p14, full insert sequence. |