PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG666800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 572aa MW: 63551.4 Da PI: 4.6119 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 426.1 | 2.8e-130 | 202 | 571 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL++cA+a+s+ + +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ + + +l+a+++++e++P++ Pavir.5KG666800.1.p 202 KQLLFDCATALSEYNIDEAQAIISDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGNGIYKALTCKDPP---TLYQLSAMQILFEICPCF 288 589*****************************************************************9...89999************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 ++++++aN aIlea geer+HiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++ l+ +g+rL+++A+ +gv+fef+ Pavir.5KG666800.1.p 289 RLGFMAANYAILEACRGEERLHIIDFDINQGSQYITLIQFLKNNANKPQHLRITGVDDPETVqrPIGGLKVIGQRLEQLAQDCGVSFEFR 378 ************************************************************99878899********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 + v +l d+++ +L+++pgEalaVn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e +yy+alfd Pavir.5KG666800.1.p 379 A-VGANLGDVTPAMLDCRPGEALAVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYAALFD 467 *.799************************************************************************************* PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 sl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF+p p+++++ + +k++l+ + ++ y+ ee++g l Pavir.5KG666800.1.p 468 SLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTPCPFNSNVINGMKSILKSYCDR-YKFEEDHGGLH 556 ****************************************************************************66.*********** PP GRAS 360 lgWkdrpLvsvSaWr 374 +gW +++L++ SaW+ Pavir.5KG666800.1.p 557 FGWGEKTLIVSSAWQ 571 **************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.778 | 175 | 552 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.7E-128 | 202 | 571 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MSFVRRADPS TAYTDNLYIH KFAASSSNFA VRRFSSDTQL FRYGPEPYNG EYGHMGFIGS 60 PSAAFQNSFC SQQASLTPYP LNADGRSPSV ADTQSNSCSD AAKESPVASN VSQQNSQSVS 120 DTQSSEIEVE FDEDEIRLKL QELEHALLED GDDILFEISQ ASSINDEWTD PMKNVLLPNS 180 PKESESSINC AVSNSRATRT PKQLLFDCAT ALSEYNIDEA QAIISDLRQM VSIQGDPSQR 240 IAAYLVEGLA ARIVASGNGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL 300 EACRGEERLH IIDFDINQGS QYITLIQFLK NNANKPQHLR ITGVDDPETV QRPIGGLKVI 360 GQRLEQLAQD CGVSFEFRAV GANLGDVTPA MLDCRPGEAL AVNFAFQLHH LPDESVSIMN 420 ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYAALFDSLD ATLPRESPDR 480 MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFTPCPFNSN VINGMKSILK 540 SYCDRYKFEE DHGGLHFGWG EKTLIVSSAW Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-61 | 208 | 570 | 26 | 378 | Protein SCARECROW |
5b3h_A | 9e-62 | 208 | 570 | 25 | 377 | Protein SCARECROW |
5b3h_D | 9e-62 | 208 | 570 | 25 | 377 | Protein SCARECROW |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11608 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG666800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819107.1 | 0.0 | scarecrow-like protein 1 isoform X1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2T7DDM8 | 0.0 | A0A2T7DDM8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J20385.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG666800.1.p |
Publications ? help Back to Top | |||
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