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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.5KG647000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NAC |
| Protein Properties |
Length: 198aa MW: 21496.2 Da PI: 8.0443 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5KG647000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 134.1 | 9.6e-42 | 6 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratks 80
lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+P +Lp + ++e + w+fF++r++++a+g r++r+t s
Pavir.5KG647000.1.p 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPGQLPGihgmlcggggEGEGEGEPWFFFCPRQEREARGGRPSRTTPS 95
79****************************99****************5578888876655557779*********************** PP
NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
gyWka g+ v+s+ +++++g+kkt+vfy+gr p+g kt+W m+eyr+
Pavir.5KG647000.1.p 96 GYWKAAGTPGVVYSAdDRRAIGVKKTMVFYQGRVPSGAKTRWKMNEYRA 144
*************9977888***************************95 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPG QLPGIHGMLC 60
GGGGEGEGEG EPWFFFCPRQ EREARGGRPS RTTPSGYWKA AGTPGVVYSA DDRRAIGVKK 120
TMVFYQGRVP SGAKTRWKMN EYRALQHYAA PDAGAGARAD GSSSSARAAA PPIRSPQVEE 180
RVQPVSTLHP IWNPEAV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-29 | 1 | 146 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-29 | 1 | 146 | 12 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 1e-29 | 1 | 146 | 12 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK071274 | 1e-116 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
