PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG646700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 426aa MW: 45366.9 Da PI: 4.9771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2.1e-18 | 115 | 161 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ v+qlG + W+ Ia+ ++ gR +kqc++rw ++l Pavir.5KG646700.1.p 115 KGSWTEEEDSILKAMVTQLGERKWSVIAQSLP-GRIGKQCRERWINHL 161 799*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 171 | 210 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+e+d+ll+ a+k +G++ W++Iar ++ gR+++ +k++w+ Pavir.5KG646700.1.p 171 WTEEDDKLLIGAHKYFGNR-WSSIARFLP-GRSENAIKNHWN 210 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.747 | 110 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.41E-29 | 114 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 114 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 115 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 115 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.88E-15 | 117 | 161 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 164 | 214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.336 | 167 | 217 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-12 | 167 | 215 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.02E-12 | 171 | 213 | No hit | No description |
Pfam | PF00249 | 3.2E-13 | 171 | 210 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MAFNNSILAN RALASPLTGD EVAVSYLASS SYGDPQFEHN LVAPSFMQAG GVQFMDAPLD 60 VSSLVARIGM TPAGFEMPEG AIVGSSYNTL GGVPIDVEEV PQPQTGSNDK PAPFKGSWTE 120 EEDSILKAMV TQLGERKWSV IAQSLPGRIG KQCRERWINH LRPDIKQNDI WTEEDDKLLI 180 GAHKYFGNRW SSIARFLPGR SENAIKNHWN ATKRSLKAKR RLKKKKSEQQ VPPSQLTILE 240 EYIRSLPPAS ESAAPPAAAS PPLQGPAYSG PIVPEAVHPP APGMEMNFNT ANLAGPPLSI 300 HLPGIINHSM PQLPDLNITC DPQEASYISY AMDAPSPAPQ LQLVTQDPQQ ATFSWFPFVE 360 YPTALNTGLA AGPSYYAGGS SSNAVANGYY SGAGAGYYYS EAGTSNAGGN GGEPAGDTGG 420 VVELP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-40 | 115 | 214 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 1e-40 | 115 | 214 | 4 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG646700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814296.1 | 0.0 | transcription factor MYB77-like | ||||
TrEMBL | A0A2S3HPX2 | 0.0 | A0A2S3HPX2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05795.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-41 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG646700.1.p |