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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.5KG645700.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
WOX |
| Protein Properties |
Length: 215aa MW: 24203.1 Da PI: 8.6332 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5KG645700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.3 | 3.6e-20 | 11 | 72 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++ R+++t+eq+++L elF+ r+p++e++++++++l +++ ++V++WFqN++a+e++
Pavir.5KG645700.1.p 11 KCGRWNPTAEQVKVLTELFRAgLRTPTTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72
568*****************99**************************************95 PP
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| 2 | Wus_type_Homeobox | 110.8 | 7.4e-36 | 12 | 73 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
+ RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gk+e+kNVfyWFQN+kaRer++
Pavir.5KG645700.1.p 12 CGRWNPTAEQVKVLTELFRAGLRTPTTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73
78**********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPTTEQ IQRISTHLSA FGKVESKNVF 60
YWFQNHKARE RHHHKKRRRG ASSPDDSGSG SNNEDDGRAA SREPPAAPDL ALQPPESKRE 120
ARSYHHHRLL TCYVRDVMEQ QAAAEAAALW ERPTREVETL ELFPLKSYVD LEADNKVRYV 180
RSGAASEQCR EFSFFDVAGG RDPPLELRLC SFGP*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During embryogenesis and crown root formation, it is expressed prior to the morphological differentiation of the root. {ECO:0000269|PubMed:12904206}. |
| Uniprot | TISSUE SPECIFICITY: Specifically expressed in the central cells of the quiescent center (QC) of the root. {ECO:0000269|PubMed:12904206}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM490239 | 0.0 | AM490239.1 Zea mays mRNA for putative wuschel homeobox protein (wox5B gene). |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Li S, et al.
OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
New Phytol., 2014. 201(1): p. 66-79
[PMID:24020752] - Chu H, et al.
A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
J. Exp. Bot., 2013. 64(17): p. 5359-69
[PMID:24043854] - Wang W, et al.
Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
PLoS Genet., 2014. 10(3): p. e1004154
[PMID:24625559] - Coudert Y, et al.
Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
New Phytol., 2015. 206(1): p. 243-54
[PMID:25442012]
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