PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG629200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 39647.3 Da PI: 6.2441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.8e-18 | 60 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l d+v++lG ++W++Iar ++ gR++k+c++rw + Pavir.5KG629200.1.p 60 RGPWSPEEDAVLSDLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 105 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 112 | 156 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++ a++ +G++ W+ Ia+ + gRt++ +k++w++ Pavir.5KG629200.1.p 112 RKPFTEEEDRIIMVAHAVHGNK-WACIAKLLD-GRTDNAIKNHWNST 156 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.208 | 55 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-30 | 58 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-15 | 59 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-17 | 60 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-14 | 62 | 104 | No hit | No description |
SMART | SM00717 | 8.8E-13 | 111 | 159 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.585 | 111 | 161 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.0E-13 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.79E-10 | 114 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-23 | 114 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MAVETQTLTE PPPQPQSHQA SPPPSGEDDD VVVVSGASVG GDAAASAASA GNATTEERVR 60 GPWSPEEDAV LSDLVEKLGA RNWTLIARGI PGRSGKSCRL RWCNQLDPQV KRKPFTEEED 120 RIIMVAHAVH GNKWACIAKL LDGRTDNAIK NHWNSTLRRR HCNDGRCKHG VSVERSVPEV 180 SRAVSEESWP LKDPSSFTAM DVRDAPVQTV TETSAGAWLI PVPDQCYSTQ AVDPPYLSRP 240 VAKIGAFRPY NLGHVSEPTQ QETPSSVFKP ESTLKALTPE SEVFKFADPT CFAAGVPNKC 300 GHGCSSAQKR TRKNSLLGPE FNEFEDHPPI LSSSFASLVS EISSIAWMRS GMQSSDASSL 360 LQSAPPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-40 | 59 | 160 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG629200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814267.1 | 0.0 | transcription factor MYB1-like | ||||
TrEMBL | A0A2T7DED2 | 0.0 | A0A2T7DED2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6SNJ7 | 0.0 | A0A3L6SNJ7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea03398.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8990 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 8e-78 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG629200.1.p |