PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG623000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 341aa    MW: 35737.6 Da    PI: 6.3428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG623000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31154210258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          +Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h
  Pavir.5KG623000.1.p 154 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTDDPEMLVVTYEGPHLH 210
                          7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.66E-26151212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-29151211IPR003657WRKY domain
SMARTSM007741.8E-35153212IPR003657WRKY domain
PROSITE profilePS5081127.737154213IPR003657WRKY domain
PfamPF031068.4E-26155210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGDVLHPHPQ AGAGDVQALW PGDLDEQLIT ELLSDDSLLL GALQQPPAGG GDSEHGSADT  60
GASPAAAPAA CDSSAGEQEL LPQLEEVSRA LCSVYTGPTI RDIEMALWTS RPSYPWSSRR  120
YNPVHLGSKF GAASRAPVSK YTTKVRSCGG KTPSDGYKWR KYGQKSIKNN PHPRSYYKCT  180
SSRCGAKKHV EKSTDDPEML VVTYEGPHLH GPQPLFPRRQ WASVDLSGAA AAAAKKKKPD  240
KNPSPAASSA APARASDEGG GWPPNDGHQM TCGDAEEAPG NGRAEDAAAR RHLAAAADSC  300
DGGSTASVPA ATVLTCDSSP TTWSCPDFPF VWSPEAPLLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211552101974Probable WRKY transcription factor 4
2lex_A4e-211552101974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG623000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016165e-88FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970545.11e-144WRKY transcription factor WRKY24 isoform X1
TrEMBLA0A3L6SMZ81e-169A0A3L6SMZ8_PANMI; Uncharacterized protein
STRINGSb03g039550.11e-119(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-29WRKY DNA-binding protein 49