PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG602600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 268aa    MW: 29758.8 Da    PI: 5.975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG602600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.63.3e-2070129358
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58 
                          Dg+ WrKYGqK++k++e+pr Y+rC+++   +C++ k +++++ +dp + e+tY+ eH++
  Pavir.5KG602600.1.p  70 DGHLWRKYGQKKIKDAEYPRLYFRCSYRgdrQCMASKLLQQKNgDDPPLYEVTYTYEHTC 129
                          9**************************99999******9877637899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.42E-2161132IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-2161132IPR003657WRKY domain
SMARTSM007744.2E-3068131IPR003657WRKY domain
PfamPF031061.8E-2170129IPR003657WRKY domain
PROSITE profilePS5081116.09970132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASPPMKTEQ SFEFGELSPQ DAMGSASESS YSPPGAVFGV SPPESSPRGR NNRRRDRPSW  60
VKITYTPYFD GHLWRKYGQK KIKDAEYPRL YFRCSYRGDR QCMASKLLQQ KNGDDPPLYE  120
VTYTYEHTCG APPIPFPDIV AEPPPAASRE GLVLRFDSPA GGHGGAAQMM QQHQGQHQST  180
CRSPFMMLSF GSSCQTHNQQ PAFHSDLAEP GTSSSIPNEG LPAPPPANGD GDMFPTWDSF  240
TYDFDSHVHF GDHTRLPYNS NYDCDDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-15701291068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG602600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818994.11e-158probable WRKY transcription factor 48
TrEMBLA0A2T7DF791e-157A0A2T7DF79_9POAL; Uncharacterized protein
STRINGPavir.J37617.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.17e-17WRKY DNA-binding protein 62