PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG577900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 487aa    MW: 50535.4 Da    PI: 9.9453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG577900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002242264223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ Cg+ F  ++ L+ H  + H
  Pavir.5KG577900.1.p 242 SCHRCGEQFGKWEALEAHHLSkH 264
                          7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280243264IPR007087Zinc finger, C2H2
SuperFamilySSF563994.12E-22266485No hitNo description
Gene3DG3DSA:3.90.228.102.3E-13290462IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGERRRRGTA AAAGPGGGVA RATEEEKAAA APGKGPPPTV WFALKRSLHC RSEPSEVHVP  60
RARAAGAAGA GHLSSIATKP RAAPRSGCSR SIANLRDVIH GSKRHPGQPP SCSPRSIGSS  120
EFLNPIAHEV VLSTNSRCEL KITGFGGCGG LGAVGTTAAH DADGAVVSSF VGTLRPGTPG  180
PAWAGHGLPY SGSMRGGGVR CTPPRSPNVL LERNGGSVAA GHRASCEENA KAGAGKGSGG  240
LSCHRCGEQF GKWEALEAHH LSKHAVTELV EGDSSRKIVE IICRTSLLKS ESSCVRIDRV  300
FKVHNTQRTL SRFEEYREAV KLKASKLPKK HPRCLADGNE LLRFHGTTLS CALGSGGGGS  360
SSSLCASDRC AVCRIIRHGF SARKEGKAGV GVGVFTTSTS GRAFESIEAP PADGDDGEAA  420
AARKALLVCR VIAGRVHKPL ENLRELAGQT GFDSLAGKVG PYSNIEELYL LNPRALLPCF  480
VVICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG577900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2521250.0FM252125.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-1 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818591.10.0uncharacterized protein LOC112894954
TrEMBLA0A2T7DFT00.0A0A2T7DFT0_9POAL; Uncharacterized protein
STRINGPavir.Eb03434.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-135C2H2 family protein