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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.5KG569200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 360aa MW: 39071.4 Da PI: 10.3862 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5KG569200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 32.6 | 1.4e-10 | 118 | 166 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h +rEr RR+r+ ++f+ L llP+ s K K +i+ Av YI++L+
Pavir.5KG569200.1.p 118 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAVGYIRELE 166
599***********************7...69*****************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MADPFFYLGQ DGADEDYLMS LGLVLPPEPP AGSAFEAYQR RPTLLESRLM MMGRERGRHS 60
NSGGGENVHR RMFGYYLRRI ARRDDAAAGA AHSAPADDEA AVVPPPPPPP PRSSSRFRHI 120
MRERLRRERL SQGFADLHAL LPPGASSKGG KNDIVGAAVG YIRELEGRRG WLRARNQELL 180
ERAASSRARS SGAGAARNAA GGDMVVKVRA ESEDRAAAVD AFETVLRRLK AMGALRVTAI 240
RSCFCTGGMW MNVGVEGQGA FCKCPPSGEM AGRELAAWPV TSAEQELPER RISRISFPKQ 300
TIPASISSSS RDCGGVKAGA DESRARVTLA WGKEGVQKPK RDGGIRRSEL FEMLMHISW*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU948863 | 1e-58 | EU948863.1 Zea mays clone 388069 mRNA sequence. |
| GenBank | KJ728030 | 1e-58 | KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds. |
