PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG514000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 389aa MW: 44201.1 Da PI: 7.2258 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l Pavir.5KG514000.1.p 111 KGQWTLEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 157 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 163 | 205 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+ eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+ Pavir.5KG514000.1.p 163 KDVWSDEEDMVLIQAHKEVGNK-WTEIAKCLP-GRTENSIKNHWN 205 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.505 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-32 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 110 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-29 | 112 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-14 | 114 | 157 | No hit | No description |
Pfam | PF13921 | 5.6E-18 | 114 | 171 | No hit | No description |
SMART | SM00717 | 1.2E-16 | 162 | 210 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.861 | 162 | 212 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 165 | 210 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-12 | 166 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MQENGHCYEL HPVDHPFEAI RDYTSGSMLP SATFNDLQYF AERGTKKPIF DHAASIDRTV 60 ESQLHLLTPK TEVSHLKENG LVSYKACETN GRFVPRKKTY SISLKKANVV KGQWTLEEDR 120 KLVKLVEQFG LRKWSYIAQM LPGRVGKQCR ERWHNHLRPN IKKDVWSDEE DMVLIQAHKE 180 VGNKWTEIAK CLPGRTENSI KNHWNATKRR QFARRCSHTS SKQGPKSGTL LQNYIKGLGI 240 GPSKNFIASL VQPTLLPSSS LPATPREGPA KMIDERLEHN NPSNILDSQG ILSIHEHNCS 300 KAQSREELAM APICDDFSIG MLCDSLFDTK EETCFQVYTV DDDMNMNCTF NHVDQAGSAE 360 IEDVHVKEEM DLIEMVTVTQ KYGKEEKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-44 | 109 | 212 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-44 | 109 | 212 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-44 | 109 | 212 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42177 | 0.0 | leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG514000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243252 | 1e-45 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796038.1 | 1e-180 | transcription factor MYB41-like | ||||
TrEMBL | A0A3L6T799 | 0.0 | A0A3L6T799_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J25000.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-65 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG514000.1.p |