PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG514000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 389aa    MW: 44201.1 Da    PI: 7.2258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG514000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-18111157148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Pavir.5KG514000.1.p 111 KGQWTLEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 157
                          799*****************************.*************97 PP

2Myb_DNA-binding53.55.4e-17163205145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Pavir.5KG514000.1.p 163 KDVWSDEEDMVLIQAHKEVGNK-WTEIAKCLP-GRTENSIKNHWN 205
                          578*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.505106161IPR017930Myb domain
SuperFamilySSF466898.99E-32108204IPR009057Homeodomain-like
SMARTSM007171.2E-14110159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-29112164IPR009057Homeodomain-like
CDDcd001673.65E-14114157No hitNo description
PfamPF139215.6E-18114171No hitNo description
SMARTSM007171.2E-16162210IPR001005SANT/Myb domain
PROSITE profilePS5129418.861162212IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-21165210IPR009057Homeodomain-like
CDDcd001671.25E-12166208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MQENGHCYEL HPVDHPFEAI RDYTSGSMLP SATFNDLQYF AERGTKKPIF DHAASIDRTV  60
ESQLHLLTPK TEVSHLKENG LVSYKACETN GRFVPRKKTY SISLKKANVV KGQWTLEEDR  120
KLVKLVEQFG LRKWSYIAQM LPGRVGKQCR ERWHNHLRPN IKKDVWSDEE DMVLIQAHKE  180
VGNKWTEIAK CLPGRTENSI KNHWNATKRR QFARRCSHTS SKQGPKSGTL LQNYIKGLGI  240
GPSKNFIASL VQPTLLPSSS LPATPREGPA KMIDERLEHN NPSNILDSQG ILSIHEHNCS  300
KAQSREELAM APICDDFSIG MLCDSLFDTK EETCFQVYTV DDDMNMNCTF NHVDQAGSAE  360
IEDVHVKEEM DLIEMVTVTQ KYGKEEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-441092122105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-441092122105C-Myb DNA-Binding Domain
1msf_C3e-441092122105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.421770.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG514000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432521e-45AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-180transcription factor MYB41-like
TrEMBLA0A3L6T7990.0A0A3L6T799_PANMI; Uncharacterized protein
STRINGPavir.J25000.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-65myb domain protein 98