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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5KG474900.1.p |
Organism |
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Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WRKY |
Protein Properties |
Length: 248aa MW: 26375.6 Da PI: 7.1346 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG474900.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.3 | 1e-30 | 162 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh
Pavir.5KG474900.1.p 162 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 220
59********************************************************5 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MALASCDSLP ADAVCFFPAM ACRHPCDGAG AGSGLAASAF YGGARSPAAA LLFSRPQLAF 60 GGAALTGLAP PRQPDAVFEC LSEEDVSSVV PGTTFGPPPP EMPVEYAGPD AASGYAHHVM 120 SVSRMSSRYV MHRGAAAMAG AEGSTRTTDR IAFRVRSEEE VLDDGYKWRK YGKKSVKNSP 180 NPRNYYRCST EGCNVKKRVE RDKDDPSYVV TMYEGVHNHV SPGTIYYATQ DVASGRFFVA 240 GMHQALD*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KU058612 | 1e-103 | KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence. |