PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG427500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 463aa    MW: 46926.5 Da    PI: 7.1381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG427500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05102123223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp Cgk F+++     H+++H
  Pavir.5KG427500.1.p 102 PCPVCGKEFRSQKAVCGHMKVH 123
                          6*******************99 PP
2zf-C2H2120.00065352374123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  F+   +L  H+r+H
  Pavir.5KG427500.1.p 352 HVCKVCGAAFPAGVQLGGHMRKH 374
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681101124IPR007087Zinc finger, C2H2
SMARTSM003559.4E-4101123IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.4E-7102123No hitNo description
PfamPF139121.6E-4103123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.4E-7293320No hitNo description
PfamPF139124.4E-4298322IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307298325IPR007087Zinc finger, C2H2
SMARTSM003550.1298320IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
PfamPF139124.9E-7351376IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159352379IPR007087Zinc finger, C2H2
SMARTSM003550.12352374IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280354374IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAGGGSSEDR RRRPTSRCHG DLRDDEPEEG EVGVPGYHYD VDTEEYYNRH GCSSSDSDET  60
VSNSNAAACS VVPASCYGEA TSPPSVAASS NGGASWPAAA LPCPVCGKEF RSQKAVCGHM  120
KVHAIGTHDR LGIGKGGKGI KRDVAAVASW GGTGKRGCSG LGSRAAPSAN DAESDHSMAI  180
VAAEPMIVLQ PKPLAFAAPN LSSVHKAFSA PNVSSVPMAS AQGAPNVSGK NSSAQPKHNA  240
AMDAVVAGPP SEAVVHPHSA PPTPPAAAEQ APSIHQHPSG PPPPPAAAAA DRQNPNGYMC  300
KECNEWFPTH QGLGAHVAAH RSREVAAAVE EGVLEDGAVA CRPNAKLETA AHVCKVCGAA  360
FPAGVQLGGH MRKHYAGPPI VPNKKPRLIQ PTPPPPALTL ALPAGANADG ASPAAPAVER  420
TPEPALGLAV VGRVLLFGID IGVRVQKPAA QEGPASTGSD QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG427500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SL600.0A0A3L6SL60_PANMI; Uncharacterized protein
STRINGPavir.J12116.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-05C2H2 family protein