PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG343200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 516aa    MW: 60492.6 Da    PI: 5.6001
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG343200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.36.1e-1926114191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +fYn+YA   GFsvrks+ + +++++eit r+ + ++e k  +++    k+rr+r  tr+gC akl++ +++ +g+w+v+++  eHnH l
  Pavir.5KG343200.1.p  26 QFYNAYALGKGFSVRKSYVEWNSDHTEITLRRRQGYREDKYVKKE---IKKRRPRDITRVGCPAKLVIALDRnSGQWYVKNFIDEHNHLL 112
                          6*******************9999999999986666666655544...459*******************999***************99 PP

                 FAR1  90 ap 91 
                          ap
  Pavir.5KG343200.1.p 113 AP 114
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-1726114IPR004330FAR1 DNA binding domain
PfamPF105513.4E-32235329IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MADLENLMEY SEIVSKMFAD EDEGYQFYNA YALGKGFSVR KSYVEWNSDH TEITLRRRQG  60
YREDKYVKKE IKKRRPRDIT RVGCPAKLVI ALDRNSGQWY VKNFIDEHNH LLAPADLGCL  120
LRSHRSISDA QKAEIVELGV AGIRKHQIFE IMEMQYGGYD EVGYTSRDLY NFCHLYKQEI  180
IAADDAQIII SHLIERQNRD SDFFFKYMTD GEGHLQGLFW CDTQCLLDYE AFGDVVVFDS  240
TYKTNRYNLP LVPFVGVNHH YRTIIFGCEI ISHENIKSYV WLLKIFTEAN VQKHPISMIT  300
DEDLAMQRAI SVVWPNSLHR LCGWHIEQNL VRNIHDDTVK AEFRIFIYDL CSIEEIERKW  360
QAFFEKYDVI EDSWLYQMYE ARATWCAAYH AGNHYLGLRS NQRSESMNSR LQMKLDGKMT  420
LLEMVQHYES CLTKVRRIEE DDDANALQYE PFTDLDASIL EVNAKKRFTP NVFKTKVQFS  480
VEAAKKCSLV EILDGDDTTE YIIGRSDRDM MYYVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15574RRRQGYREDKYVKKEIKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG343200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2DKR40.0A0A2K2DKR4_BRADI; Uncharacterized protein
STRINGPavir.Ea01546.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-74FAR1-related sequence 5