PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG341100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 676aa    MW: 72449.9 Da    PI: 5.063
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG341100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09468489526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+++  tG C +GdrCkF+H+
  Pavir.5KG341100.1.p 468 ECHNYKNTGMCIRGDRCKFSHV 489
                          6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-5409434IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981409436IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038410435IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4438464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971438465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5439463IPR000571Zinc finger, CCCH-type
SMARTSM003560.0099466490IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.521468491IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6468489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5468491IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4469488IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MEEEDALAAS PVAPPPAPLA AAAVLTRRRS HLDSASYRTL SRLFSHCLHL QPSSRVGTAP  60
TEGEPAVAKP TGEHSGDSAQ VPEGADFDQL KDLEKETVSP AREQLAAANP TGNPCEAEAP  120
QRSHDDLDEV VAVESTCGTG NTSAVVEKLG IGAGTVVVED DALQLVKACL ETTEVNESLE  180
GALGNDDGQL LLDAMLTNFT GLIDDVGAGV IPVETCVVSG GELQNSKASE DLKQSGGRIE  240
DVEPVSNLNR ELNIDGGFEE GEIEGELQDL DSEESGDSEL VDDDNAEDEN LGGDSVSKGS  300
GACDHGIQSV NLHSKPEIVG NGHLTLNKDA NVRGDEQISV TRAQAVSYDE VVDWNETPLP  360
GNEATNPGKK RKRSLTEERK AKKTENKRKK RAKQRIADGV KRPKLQHVTK PKKPCHFYDH  420
GKCQQGSKCK FSHDFTPSTK SKPCKHFACG SCLKGDDCPY DHELSNYECH NYKNTGMCIR  480
GDRCKFSHVM RSTEGTPTQD AKPSDASLAF EKTNCREHTS GQKTSTVHSG EPVTSASTKQ  540
QCSVLKNLAG FSINSQNVSN RIPKGVQFLP FDKSGSNLSS PHLDALSIEK PRNANATQHQ  600
YIGGHEAEKQ KIAKKNDQES LLDEKNSSNE ATMPPFSDPK KASLPISSAA TSVHTQPEIS  660
EASRILQEFL FGAGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373KKRKRS
2370390RKRSLTEERKAKKTENKRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.88090.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG341100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817940.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817941.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817942.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B31e-178C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A2T7DKP60.0A0A2T7DKP6_9POAL; Uncharacterized protein
STRINGPavir.Ea01892.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]