PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG289000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 169aa MW: 17434.8 Da PI: 11.0077 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 55 | 1.6e-17 | 23 | 103 | 83 | 153 |
GRAS 83 l..fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg 153 l f+evsP++ + + +aN aI + ++ +++H+ D+++s+G+QWp+Ll+aL+ p + pp + +T+ g+++++ Pavir.5KG289000.1.p 23 LirFNEVSPWFAVPNALANAAIAQTAAAMgaatepRQIHVADIGVSHGVQWPTLLEALTRVPrgSTPPAVHLTVGGPAAAH 103 235*******************996654444677899**********************76644889******98776554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.072 | 1 | 168 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-15 | 23 | 103 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MPPCECPTPM FSGVDPRLFR ASLIRFNEVS PWFAVPNALA NAAIAQTAAA MGAATEPRQI 60 HVADIGVSHG VQWPTLLEAL TRVPRGSTPP AVHLTVGGPA AAHRCRSPLH LPATTAHRSC 120 SGTPRPSTWT SPSCKHHART ACTALSPPAR PSSSASSSGS ATPPPTSR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG289000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008654143.1 | 3e-50 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 5e-22 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A3L6E287 | 4e-52 | A0A3L6E287_MAIZE; Nodulation-signaling pathway 1 protein | ||||
STRING | Pavir.J21140.1.p | 2e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6135 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 4e-14 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG289000.1.p |
Publications ? help Back to Top | |||
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