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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG285700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22022.2 Da PI: 12.3903 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.3 | 1.3e-11 | 29 | 64 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rgr++ eE+e +++++ lG++ W+ Ia++++ gRt+ Pavir.5KG285700.1.p 29 RGRFSFEEEETIIQLHSILGNK-WSVIAARLP-GRTDH 64 89********************.*********.***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.77E-15 | 12 | 64 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-8 | 12 | 36 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.369 | 24 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-5 | 28 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-10 | 29 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.57E-7 | 31 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 37 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MPGSHGRARA VRKSCRLRWT NYLRPDIKRG RFSFEEEETI IQLHSILGNK WSVIAARLPG 60 RTDHERSRTT GTHIRKRLLC MGIDPSPTGP ASTSSTSPRS SSPPRRRLLP YAGRPRHAPR 120 LRAAHQLTGP APPRRLHPAL GLGRDRRQQQ QQLLPWLLQA QMAAAYRSAA VLGGAAGWGQ 180 AFERARAGVG GSPWAAWDG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG285700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248579 | 1e-122 | AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096796.1 | 2e-40 | transcription factor MYB102 | ||||
TrEMBL | A0A2X0SML3 | 1e-40 | A0A2X0SML3_WHEAT; Uncharacterized protein | ||||
STRING | Pavir.J02993.1.p | 1e-138 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 5e-38 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG285700.1.p |