PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG272900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 32428.8 Da PI: 7.5945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.6e-15 | 48 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv v+++G ++W+ a+ g++Rt+k+c++rw +yl Pavir.5KG272900.1.p 48 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 95 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 101 | 144 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++ Pavir.5KG272900.1.p 101 RGRITPDEERLILELHAQYGSR-WSRIARSLP-GRTDNEIKNYWRT 144 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.626 | 43 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-29 | 44 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 47 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 48 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-20 | 49 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-9 | 50 | 95 | No hit | No description |
PROSITE profile | PS51294 | 23.772 | 96 | 150 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 101 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 103 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.14E-11 | 105 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDHRSMAAAA MSMSMFGRSK QKKDGERSSS SIGNQQAAAA ALPPRMRKGP WTEEEDAQLV 60 WFVRLFGERR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLR RGRITPDEER LILELHAQYG 120 SRWSRIARSL PGRTDNEIKN YWRTRTRKQK ASASSSSTVT TTASCSGSPS SGSGRLTAAS 180 SSAVTESALR ESGGGDDDED AELDEASTTA ASQHRHQQQQ QQESSYTMDQ FWNEIAAADA 240 AASYMVDGWG GAGHPAAAEP PLPSSPVWEY CSDYSLWRID DEEYYKKMLD AS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-27 | 28 | 149 | 38 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 28 | 149 | 38 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-27 | 27 | 149 | 6 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3636 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG272900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728360 | 1e-103 | KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806767.1 | 1e-112 | transcription factor MYB48-like | ||||
TrEMBL | A0A2S3H7I2 | 1e-157 | A0A2S3H7I2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04129.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-57 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG272900.1.p |