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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG220400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 165aa MW: 17988.5 Da PI: 6.5201 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 119.2 | 5e-37 | 10 | 164 | 222 | 374 |
GRAS 222 serdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 +e ++Lk vk + P vv+++e+e+ ++ ++ +r + a+++ysa+f++lea++p+ s+er vE+e+lgrei+ + +ga+ Pavir.5KG220400.1.p 10 DEVAAFLKWVKAMAPAVVTIAERETVGGGYdridDLHQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEASLGPAGAR--- 96 34679*******************65544334459**************************************************98... PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + le W ++ ++aGF + pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+ Pavir.5KG220400.1.p 97 WWRGLELWGAAARAAGFAERPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 164 88999**************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.598 | 1 | 143 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-34 | 10 | 164 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MFLHKLGGQD EVAAFLKWVK AMAPAVVTIA ERETVGGGYD RIDDLHQRAA VAMDHYSAVF 60 EALEATVPPG SRERLAVEQE VLGREIEASL GPAGARWWRG LELWGAAARA AGFAERPLSA 120 FAVSQARLLL RLHYPSEGYL VQEARGACFL GWQTRPLLSV SSWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-17 | 4 | 164 | 213 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG220400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP876558 | 0.0 | KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810768.1 | 2e-99 | protein MONOCULM 1-like | ||||
Refseq | XP_025810769.1 | 2e-99 | protein MONOCULM 1-like | ||||
Swissprot | Q84MM9 | 9e-83 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A2T7DWM2 | 4e-98 | A0A2T7DWM2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8JCB9 | 4e-98 | A0A2T8JCB9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00564.1.p | 1e-97 | (Panicum virgatum) | ||||
STRING | Si008068m | 5e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 4e-35 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG220400.1.p |