PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG212400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 110aa MW: 12736.5 Da PI: 10.82 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.8e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n +nrqvtfskRr g++KKA EL +LCda+v +++fs tg+lye+ss Pavir.5KG212400.1.p 10 RIDNRTNRQVTFSKRRSGLMKKARELAILCDADVGLVVFSFTGRLYEFSS 59 9***********************************************96 PP | |||||||
2 | K-box | 15.2 | 8.7e-07 | 85 | 109 | 12 | 36 |
K-box 12 akaeslqqelakLkkeienLqreqR 36 ++a+ +q e+a L+++++nLq+++R Pavir.5KG212400.1.p 85 SEAKFWQMEVATLRQQVQNLQNNNR 109 6889*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.202 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-32 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.83E-41 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 3.7E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MGRGKIAIQR IDNRTNRQVT FSKRRSGLMK KARELAILCD ADVGLVVFSF TGRLYEFSSS 60 SMKTTIERYQ EAREENNCRF LNPISEAKFW QMEVATLRQQ VQNLQNNNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 2e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 2e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 2e-22 | 1 | 87 | 1 | 87 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedling roots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG212400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967658.1 | 9e-63 | MADS-box transcription factor 25 isoform X1 | ||||
Refseq | XP_022682316.1 | 9e-63 | MADS-box transcription factor 25 isoform X1 | ||||
Refseq | XP_022682317.1 | 7e-63 | MADS-box transcription factor 25 isoform X2 | ||||
Swissprot | Q84NC5 | 2e-61 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A368R0W5 | 2e-61 | A0A368R0W5_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368R129 | 2e-61 | A0A368R129_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea01057.1.p | 2e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 7e-44 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG212400.1.p |
Publications ? help Back to Top | |||
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