PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG210600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 419aa MW: 44524.8 Da PI: 7.1906

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG210600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.5	1.4e-33	152	208	2	58
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++++l+cprCds+ntkfCy+nny+ +qPr++C+aC+ryWt GG+lrnvPvG rr++ Pavir.5KG210600.1.p 152 PDTILPCPRCDSMNTKFCYFNNYNANQPRHYCRACKRYWTDGGTLRNVPVGCKRRNK 208 67899**********************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-25	149	206	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-29	154	208	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.608	156	210	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	158	194	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MAASGGPDRE RQTAIRLFGL SLAATAAAAT EVSTKLADDV RSNDGIPCLP NKSLNVGASS 60 SGSKNNKEDG LQAISSQHGK MVADSESAKG EDGLQAISSQ HEKMEADSKS EEAKNGLQAI 120 NSQHGEMEAD SKSEEVKTDS DGSGQEKVFK KPDTILPCPR CDSMNTKFCY FNNYNANQPR 180 HYCRACKRYW TDGGTLRNVP VGCKRRNKGP YKRHFAMQSY DYAIAANGSV PATSSSQSRA 240 IMPPVLPGPA KENEAIAASG SEVVLRQSIS PVPDAEEQKN NTHVSLGSGD DKGQKPGPSA 300 AVAPGSSENP VLEKVGNYIS EYSNGVRVPP PHTQSYPVAV RAYTDFSTDG ARGLARSEVS 360 PISLLLSTMS DLGILAPAVP VPQPPMAPLT FPQPQMTPLT FPQPQMAPLT SLNLKWHL*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MAASGGPDRE RQTAIRLFGL SLAATAAAAT EVSTKLADDV RSNDGIPCLP NKSLNVGASS  60
SGSKNNKEDG LQAISSQHGK MVADSESAKG EDGLQAISSQ HEKMEADSKS EEAKNGLQAI  120
NSQHGEMEAD SKSEEVKTDS DGSGQEKVFK KPDTILPCPR CDSMNTKFCY FNNYNANQPR  180
HYCRACKRYW TDGGTLRNVP VGCKRRNKGP YKRHFAMQSY DYAIAANGSV PATSSSQSRA  240
IMPPVLPGPA KENEAIAASG SEVVLRQSIS PVPDAEEQKN NTHVSLGSGD DKGQKPGPSA  300
AVAPGSSENP VLEKVGNYIS EYSNGVRVPP PHTQSYPVAV RAYTDFSTDG ARGLARSEVS  360
PISLLLSTMS DLGILAPAVP VPQPPMAPLT FPQPQMTPLT FPQPQMAPLT SLNLKWHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG210600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818008.1	1e-174	cyclic dof factor 2-like
TrEMBL	A0A2T7DNM1	0.0	A0A2T7DNM1_9POAL; Uncharacterized protein
STRING	Pavir.Ea01083.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-34	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pavir.5KG210600.1.p