PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG199100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 271aa MW: 29896.5 Da PI: 7.3206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG199100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00084	241	263	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+ +F++ ++ H+++H Pavir.5KG199100.1.p 241 YKCMLCDATFTSLQTYYGHMSLH 263 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.621	241	268	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	243	263	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDPSSYPTKD MSFRQSDNDI SPLHQALRGK TTMQTLSSSV PNAHAPKESN MLPANDHSFQ 60 RYYSYEAPPP QPHLGFTHAP PTSTLASAGL IQNPIENEQE LMRSFLTIPV GNFLSVDERE 120 RVLSMEPPSI TSLLQGNKTA ILRAHLDITG ALDPGPIFQD PASGVPKEKE MRKLLRTSTS 180 HGNSYGRMPY VKPTYSGQSP MSSSVQREQP VPSVVNQGSN SNNAIREATN TTFEFTEVQR 240 YKCMLCDATF TSLQTYYGHM SLHNKGMSNN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG199100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	7e-65	uncharacterized protein LOC8060818
TrEMBL	A0A2T7DN89	1e-153	A0A2T7DN89_9POAL; Uncharacterized protein
STRING	Pavir.Ea00985.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9

Link Out ? help Back to Top
Phytozome	Pavir.5KG199100.1.p