PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG139200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 812aa    MW: 86624.7 Da    PI: 5.3865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG139200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.34.8e-22104159156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r eL+++lgL+ rqVk+WFqNrR+++k
  Pavir.5KG139200.1.p 104 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSRRLGLDPRQVKFWFQNRRTQMK 159
                          678899***********************************************999 PP
2START1823.3e-573215531206
                          HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S. CS
                START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla. 77 
                          ela +a++elvk+a+ +ep+W  s       e +n +e+  +f +  +     + +ea+r+sg+v+ ++++ lve+l+  + +W+ ++  
  Pavir.5KG139200.1.p 321 ELAISAMDELVKLAQIDEPLWLPSLngspnkETLNFEEYAHTFLPCIGvkpmgYVSEASRESGLVIiDDSVALVETLMVER-RWSDMFSs 409
                          57889********************66666666666677777766666***************997245679******999.99999999 PP

                          ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEE CS
                START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgi 152
                             ka+++e ++sg      gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d  ++++++    ++  +R+++lpSg+
  Pavir.5KG139200.1.p 410 miaKATVIEEVTSGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDQNSAttsNAANIRCRRLPSGC 499
                          999************************************************************85423333335568999********** PP

                          EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          ++++++ng +kvtwveh++++++++h+l+r+l++sgla+ga++w+a lqrqce+
  Pavir.5KG139200.1.p 500 VMQDTPNGFCKVTWVEHTEYDEASVHQLYRPLIRSGLAFGARRWLAMLQRQCEC 553
                          ****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-2285161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-2489161IPR009057Homeodomain-like
PROSITE profilePS5007118.285101161IPR001356Homeobox domain
SMARTSM003894.8E-21102165IPR001356Homeobox domain
CDDcd000866.90E-20103161No hitNo description
PfamPF000461.5E-19104159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084844.843312556IPR002913START domain
SuperFamilySSF559611.26E-27315553No hitNo description
CDDcd088751.21E-111316552No hitNo description
SMARTSM002344.3E-44321553IPR002913START domain
PfamPF018526.7E-50322553IPR002913START domain
SuperFamilySSF559619.89E-22573779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MSFGSLFDGG AGGGGGSGGM QFPFSAGFSS SPGLSLGLDN SAGGGMGGGR ALPGGPGAGG  60
GSGAAARDAD AENDSRSGSD HLDAMSGGGE DEDDAEPGNP RKRKKRYHRH TPQQIQELEA  120
LFKECPHPDE KQRGELSRRL GLDPRQVKFW FQNRRTQMKT QLERHENALL KQENDKLRAE  180
NMTIREAMRS PMCGSCGSPA MLGEVSLEEQ HLCIENARLK DELSRVYALA TKFLGKPMSM  240
LAGPLMQPHL SSLPMPSSSL ELAVGGFRGL GSIPSATMPG SMGEFAGGVS SPLGTVITPA  300
RATGSAPSAM VRIDDRSMLL ELAISAMDEL VKLAQIDEPL WLPSLNGSPN KETLNFEEYA  360
HTFLPCIGVK PMGYVSEASR ESGLVIIDDS VALVETLMVE RRWSDMFSSM IAKATVIEEV  420
TSGIAGSRNG ALLLMKAELQ VLSPLVPIRE VTFLRFCKQL AEGAWAVVDV SIDGLVRDQN  480
SATTSNAANI RCRRLPSGCV MQDTPNGFCK VTWVEHTEYD EASVHQLYRP LIRSGLAFGA  540
RRWLAMLQRQ CECLAILMSP DTVSANDSSV ITQEGKRSML KLARRMTENF CAGVSASSAR  600
EWSKLDGATG SMGEDVRVMA RKSVDEPGEP PGVVLSAATS VWVPVAPEKL FNFLRDEQLR  660
AEWDILSNGG PMQEMANIAK GQEHGNSVSL LRASAMSANQ SSMLILQETC TDASGSMVVY  720
APVDVPAMQL VMNGGDSTYV ALLPSGFAIL PDGPSATTGH KTGGSLLTVA FQILVNSQPT  780
AKLTVESVET VNNLITCTIK KIKTALQCDA T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105PRKRKKR
2100104RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166400.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG139200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816451.10.0homeobox-leucine zipper protein ROC5-like
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A2T7DQ950.0A0A2T7DQ95_9POAL; Uncharacterized protein
STRINGPavir.Eb00587.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]