 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5KG097700.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
RAV |
Protein Properties |
Length: 366aa MW: 39275.5 Da PI: 10.3466 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG097700.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 42 | 2.3e-13 | 73 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g
Pavir.5KG097700.1.p 73 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 121
78****9888.8*********......44*************************98 PP
|
2 | B3 | 96.1 | 2.3e-30 | 188 | 282 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+k+ tpsdv+k++rlv+pk++a +h + + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF
Pavir.5KG097700.1.p 188 FEKAVTPSDVGKLNRLVVPKQHAVKHfplkrsppEAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVF 277
89***************************988876666799************************************************* PP
EE-SS CS
B3 83 kldgr 87
+++
Pavir.5KG097700.1.p 278 SHSTY 282
*8754 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MGMVESISPT AAEASTSSRS TGASTATTES GAAQPPLAAA PGGAAGGEVV SPADEQAVTP 60 QPSAAAAVPQ GSSRYKGVVP QPNGRWGAQI YERHARVWLG TFPDEEAAAR AYDVAALRYR 120 GREAATNFPG AGASAPELAF LLAHSKAEIV DMLRKHTYAD ELRQGLRRGR GMGARAQPTP 180 AWARALLFEK AVTPSDVGKL NRLVVPKQHA VKHFPLKRSP PEAATGKGVL LNFEDGEGKV 240 WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSHS TYGPEKQLFI DYKKTNKTAA 300 APAEKPKEAA ARVVRLFGVD IAGDGCQKRA RPPVEMAFEQ GHQEFLMKKQ CVAHHRSPAL 360 GAFLL*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC211606 | 0.0 | AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence. |