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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5KG095200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 296aa MW: 32793.9 Da PI: 9.6687 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG095200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 32 | 75 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
WT+eE +++ +a + l + +W+ +ar ++ gRt ++++++ +
Pavir.5KG095200.1.p 32 WTAEENKQFERALAGLDLRcpDWEQVARAIP-GRTVREVVHHFKS 75
*****************99************.**********986 PP
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2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 143 | 187 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
Pavir.5KG095200.1.p 143 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVQTRTPTQVASHAQKY 187
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MMREAYMEVL PPMDHIASQR NGWYHHPALR IWTAEENKQF ERALAGLDLR CPDWEQVARA 60 IPGRTVREVV HHFKSLEVDV QQIENGMVPF PFYGGGGGSF TLQWDGNGGG GPGDFRHGYR 120 FGGGCGKRHP GRTPEQERKK GVPWTEEEHK LFLLGLKKHG KGDWRNISRN FVQTRTPTQV 180 ASHAQKYFIR LNSGGKDKRR SSIHDITMVN LTDDRPPSPS QSSLITNQSN ASAPPSAVGQ 240 FSLTADAKQN GTANLPFNSP SRTPVMPTFA MGLQDQGLQC GPLHDQLVGN PSMLF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |