PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG057300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 25212.3 Da PI: 7.401 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6e-30 | 133 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh Pavir.5KG057300.1.p 133 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 191 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 120 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-27 | 125 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.076 | 128 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-33 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-23 | 134 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAAQLGLVGH EAYAAACSYP PPAAASSYFF PPELVADSGG AGAVMMEFPP PAACTADYCL 60 PEIMGARTHD YYCSPPAPAL AKGCAAAAEN EMMNMSYVDD GGRMTMMGGS AGNGGRQPSP 120 RIGFRTRSEV DVLDDGFKWR KYGKKAVKSS PNPRNYYRCS AEGCGVKKRV ERDRDDPRYV 180 VTTYDGVHNH AVPGRGGAAQ QPARSAAPLV AAPWSAPAAP CDPWGTQLHA AAHSSESSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 123 | 193 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 123 | 193 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG057300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058613 | 1e-165 | KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818051.1 | 1e-118 | WRKY transcription factor WRKY24-like | ||||
TrEMBL | A0A3L6SK85 | 1e-117 | A0A3L6SK85_PANMI; Putative WRKY transcription factor 58 | ||||
STRING | Pavir.Ea00274.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 8e-39 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG057300.1.p |