|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5KG053800.2.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 257aa MW: 27097.5 Da PI: 7.8031 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG053800.2.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEde l +v+++G+g +W + +++ g++R++k+c++rw++yl
Pavir.5KG053800.2.p 14 RGPWSPEEDEALRSYVQRHGSGgNWISMPKKAGLKRCGKSCRLRWLNYL 62
89*********************************************97 PP
|
2 | Myb_DNA-binding | 44.2 | 4.5e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T eEd ++ + +qlG++ W++Ia+ + gRt++++k++w++
Pavir.5KG053800.2.p 69 GGFTDEEDAVILSLYTQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111
569******************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MGRTPCCDRA TVKRGPWSPE EDEALRSYVQ RHGSGGNWIS MPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTDEEDAVIL SLYTQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLLAA 120 AATAGIVSTR SPPSVPRLPA APASTPAAAA ATVATHASSL FPLLAIPTVK TEMYTCDDFL 180 APAAFRDDPF AAADGSTSAS AASSASNWSA DNGAVGGGEG SFLLDFCAGS GLGAADDHLQ 240 LPGGYYYPLD PSLSLV*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HF679416 | 1e-161 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |