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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5KG014500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 226aa MW: 23355.3 Da PI: 7.422 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG014500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 134.5 | 4e-42 | 33 | 131 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l + +reda++sl+yeA++r+ dPvyG+vgvi+ lq++l+ql
Pavir.5KG014500.1.p 33 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELLPFQREDAVNSLAYEADMRLGDPVYGCVGVISILQHNLRQL 122
7***************************************************************************************** PP
DUF260 91 kaelallke 99
+++la++k
Pavir.5KG014500.1.p 123 QQDLARAKY 131
****99876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MASSVPAPSG SVITVASSSS SAAAAAVCGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ 60 KFVHVHRVFG ASNVTKLLNE LLPFQREDAV NSLAYEADMR LGDPVYGCVG VISILQHNLR 120 QLQQDLARAK YELSKYQAAA AAASASTGPN GPQAMAEFIG SAVPNGAHNF INIGHSPALG 180 SIGGSLAAFG QEQFANAQML SRSYDGEPIS RLGINGGDEK PSAGQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
Functional Description ? help
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Source |
Description |
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |