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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.5KG014300.5.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
LBD |
| Protein Properties |
Length: 248aa MW: 26592.5 Da PI: 9.6009 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5KG014300.5.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 136.8 | 8e-43 | 33 | 131 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+CaaCk+lrrkC++ Cv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+ql
Pavir.5KG014300.5.p 33 PCAACKFLRRKCQPACVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQL 122
7***************************************************************************************** PP
DUF260 91 kaelallke 99
+++la++k
Pavir.5KG014300.5.p 123 QQDLARAKY 131
****99876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MASSVPAPSG SVITVASSSS SATAAAVCGT GSPCAACKFL RRKCQPACVF APYFPPDNPQ 60
KFVHVHRVFG ASNVTKLLNE LHPFQREDAV NSLAYEADMR LRDPVYGCVG VISILQHNLR 120
QLQQDLARAK YELSKYQAAA AAASASMGPN GPQAMAEFIG SAVPNGAHNF INIGHSPALG 180
SIGGSPAAFG QEQFANAQML SRSYDGEPIA RLGIRVFNSG MKKNRLSPIK SKYRDFLFLF 240
LFFMFYF*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
