![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5KG011600.2.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 328aa MW: 34484.3 Da PI: 4.8969 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG011600.2.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pvi&pid=Pavir.5KG011600.2.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 11.7 | 0.00049 | 181 | 218 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +r+ +++ L +++ + +K + a++L++++ YI+ L
Pavir.5KG011600.2.p 181 RKERLGDRITALHQIVSPF-----GKTDTASVLQETISYISFL 218
6678889999999999998.....8***************987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKMPPLSSSS MLLPQHLLQI 60 SSDLAPDEVN ASTATSLASS DLHDGRESNM PESWSQLLLG GLVGDHERYS AATALRSKGL 120 EGPPNMPQAA AAYNLYGHGG GEEIQTSGTN KSQGNSTASG SAPKKARVQT SSSAQSTLKV 180 RKERLGDRIT ALHQIVSPFG KTDTASVLQE TISYISFLLS QIEVLSLPYL GGHGNGNSMQ 240 QHHTVASLLN RSTSNGMAEA EASTEQQEEI NNNGGGDDEE GSTKDLRGRG LCLVPVSCTS 300 HLAGDDSDFW AVAAAPPPPP PLGIVWR*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033720 | 3e-89 | BT033720.1 Zea mays full-length cDNA clone ZM_BFc0123B16 mRNA, complete cds. |
GenBank | BT040317 | 3e-89 | BT040317.1 Zea mays full-length cDNA clone ZM_BFc0080O08 mRNA, complete cds. |
GenBank | BT041419 | 3e-89 | BT041419.1 Zea mays full-length cDNA clone ZM_BFc0163C07 mRNA, complete cds. |