PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG010700.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 862aa MW: 94261.1 Da PI: 5.1513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Pavir.5KG010700.4.p 50 KGNWKPEEDAILSRAVQTYQGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.3 | 1e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Pavir.5KG010700.4.p 102 KGPWSKEEDEIIVQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.4 | 4.3e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ Pavir.5KG010700.4.p 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.722 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-18 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-16 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-15 | 50 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-13 | 52 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 52 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.92 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-16 | 104 | 148 | No hit | No description |
Pfam | PF13921 | 2.6E-18 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 109 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-21 | 152 | 203 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.654 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.84E-11 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence Send to blast |
MASDKAKVAK KGGEDPGPPP ASREGENSHE PQRQRSLNGR TTGPTRRSTK GNWKPEEDAI 60 LSRAVQTYQG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKY 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEITLIHAHR MYGNKWAELT 180 KFLPGRTDNA IKNHWNSSVK KKVDSYISSG LLSQVPCLPV IECPAQCNSL SALNLQNNGD 240 SGCNAHNTNV ALSCELQVNV DANKGEAHDS HSSMCQVACY TSIEAVGSAL PDGHHHLSSS 300 FSQRMDLQMD VNEGSGNSVF ADDQTLCSTS NQEKSMVPYG VAQEMPFSVL SSVSDAEQKL 360 HLISDADSLK SELWKDVSLQ TLISGDTIDG DSSSGLNQPP DTSETDTNFL AQPYTLHTSN 420 PSSMMETVYE QSTLATISPS FISLDGLSDA PENRSEPIEM RDSEAEIITC SNNSFCDAEQ 480 SVKPGSSDDR PGAFTMTESI TNCKSQQSTD AEEPVASTVK EQLPKDMDIG PDEKKGEGAL 540 FYEPPRFPGL DVPFISCDLV TSADMQEFSP LGIRQWMRST MNVPTPLRLW GSPTHDESPG 600 VLKSAAESFP CTPSIMKKRQ RGLLSPTPDK RIEKKSGIAK EMTDISYMIA ATCSMNATKD 660 EATAPESVAC AEQHLDEKLK FSDGNRENFN GAPEQARDAQ NGGNKQGGQH CSSLNVANPN 720 TDLPDNLQPV GVLVEHNCND IIAADHGAKP ESLSSCKEAV SSKPKPAELV VEKSSPCINA 780 NYEYVNLLAD TPGVKKGLES PSAWKSPWYI DMHMHFQAEA RVLDFDEYST PAKAADKRLG 840 SCLGRSVSSP ILSSPNLRSF R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18443 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG010700.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814765.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A3L6SP02 | 0.0 | A0A3L6SP02_PANMI; Myb-related protein 3R-1-like | ||||
STRING | Pavir.Ea00087.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-103 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG010700.4.p |