PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG337100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 19994.3 Da PI: 8.6044 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00076 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C++ F + H+r+H Pavir.4NG337100.1.p 80 YPCPICHRLFDAVKAVHGHQRSH 102 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.73E-6 | 79 | 150 | No hit | No description |
Pfam | PF13912 | 0.031 | 80 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.54 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 80 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.3E-8 | 128 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8 | 128 | 150 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 128 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 130 | 150 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNGAQAVFFY GVAYGQFLSG VGGCSSGGGA GGGGSGDEPN RPWRPKSGHE ADAVPAALRN 60 NKKRPASSHK GKDPAGEGRY PCPICHRLFD AVKAVHGHQR SHPERDWRGM APPRPPPPVA 120 ADGRQYRYAC DRCGAPFETR QALGGHRASH SGKMGCFWLS RQQPAAAPPM LPFDLNEPAV 180 PEQEDEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG337100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967303.1 | 1e-70 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A2S3HG47 | 5e-82 | A0A2S3HG47_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DTV4 | 5e-82 | A0A2T7DTV4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J33608.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 2e-11 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG337100.1.p |