PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG332100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 289aa    MW: 30418.3 Da    PI: 5.3534
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG332100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-07447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ ++ +++   C  ++  lC  C    H+       H+++pl
  Pavir.4NG332100.1.p  4 RCDVCGAEPAAVLCCADEAALCSACDRRVHRAnkladkHRRIPL 47
                         8*****************************77999999999886 PP
2zf-B_box23.71e-075999337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         ++ C+ ++e +   fC +++  lC dC + +H+       H
  Pavir.4NG332100.1.p 59 APLCDVCKERRGLVFCVEDRAILCTDCDDPIHSAndltakH 99
                         579*****************************655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
SMARTSM003362.0E-9147IPR000315B-box-type zinc finger
CDDcd000212.18E-6347No hitNo description
PfamPF006435.8E-6447IPR000315B-box-type zinc finger
SMARTSM003367.4E-1557104IPR000315B-box-type zinc finger
PROSITE profilePS501199.37157104IPR000315B-box-type zinc finger
PfamPF006431.8E-560100IPR000315B-box-type zinc finger
CDDcd000212.23E-661104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLVRCDVCGA EPAAVLCCAD EAALCSACDR RVHRANKLAD KHRRIPLTHP SADDSAAAAP  60
LCDVCKERRG LVFCVEDRAI LCTDCDDPIH SANDLTAKHS RFLLVGAKLS AGLVDQAPPS  120
PDDGCRGSGS DKPHDVAAIC APQAQGSCTA KSLAPDCSNI YGGGSSISDY LTNICPGWRV  180
DDLLFDDAAF SAASETRCDE HEQVPSLDAD LFDVIAGRPG KRGVLGLDKV PAAAAASIAV  240
PTAAKQQGRV RERHWNCDSD SDVFAVPEIS QPPPAKKARP PAPTFWCF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.12311e-143callus| root| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG332100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384501e-118BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680731e-118EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587761e-118HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812143.11e-174B-box zinc finger protein 20-like
SwissprotQ0IGM72e-45BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2S3HGD11e-173A0A2S3HGD1_9POAL; Uncharacterized protein
STRINGPavir.Db00181.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-41salt tolerance homolog2
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]