PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 462aa MW: 49879.2 Da PI: 5.015

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG301500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.6	1.2e-27	184	238	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ Pavir.4NG301500.1.p 184 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 238 6799***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.924	181	240	IPR017930	Myb domain
SuperFamily	SSF46689	7.17E-19	182	241	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-27	182	241	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-26	184	238	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	187	236	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MLAVSSPVSC AHMEECRGGA GVEMEEIGHG PVSDDLDFDF TVDEIDFGDF FLRLEDGDAL 60 PDLEVDPGEI FTDFEAIATG SDGVMDQEVP SVQLLADAVQ LDAADPCSSV LCEESTTRVD 120 VEEEKGEYSN HAEEVVTGNN GDFGGGGGTV MAEEKSPSST TSSSQEAESR HKSTSKHSSQ 180 GKKKAKVDWT PELHRRFVQA VEQLGIDKAV PSRILEIMGI DSLTRHNIAS HLQKYRSHRK 240 HMLAREAEAA SWTQRRQMYA AGGAPAAAKR PDYSNAWTVP TIGFPPPPPP PPPHPMQHFG 300 RPLHVWGHPT PGVESPRVPM WPRHLVPRAP TTPWAPPPSD PAFWHHPYMR GPTHMPGQVA 360 PCVAVPMPAA RFPAPPVRGV LPCPPPMYRP LVPPELGSKS PQDTQLQLQI QPSSESIDAA 420 IGDVLSKPWL PLPLGLKPPS VDSVMVELQR QGVADVPPAC G*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MLAVSSPVSC AHMEECRGGA GVEMEEIGHG PVSDDLDFDF TVDEIDFGDF FLRLEDGDAL  60
PDLEVDPGEI FTDFEAIATG SDGVMDQEVP SVQLLADAVQ LDAADPCSSV LCEESTTRVD  120
VEEEKGEYSN HAEEVVTGNN GDFGGGGGTV MAEEKSPSST TSSSQEAESR HKSTSKHSSQ  180
GKKKAKVDWT PELHRRFVQA VEQLGIDKAV PSRILEIMGI DSLTRHNIAS HLQKYRSHRK  240
HMLAREAEAA SWTQRRQMYA AGGAPAAAKR PDYSNAWTVP TIGFPPPPPP PPPHPMQHFG  300
RPLHVWGHPT PGVESPRVPM WPRHLVPRAP TTPWAPPPSD PAFWHHPYMR GPTHMPGQVA  360
PCVAVPMPAA RFPAPPVRGV LPCPPPMYRP LVPPELGSKS PQDTQLQLQI QPSSESIDAA  420
IGDVLSKPWL PLPLGLKPPS VDSVMVELQR QGVADVPPAC G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	6e-17	181	236	2	57	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.12051	0.0	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:11340194}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG301500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812542.1	0.0	probable transcription factor GLK1
Swissprot	Q5Z5I4	1e-164	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	A0A3L6PCE1	0.0	A0A3L6PCE1_PANMI; Putative transcription factor GLK1
STRING	Pavir.Db01285.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-58	GBF's pro-rich region-interacting factor 1

Link Out ? help Back to Top
Phytozome	Pavir.4NG301500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]