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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.4NG299200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB_related |
Protein Properties |
Length: 339aa MW: 36539.2 Da PI: 7.3023 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.4NG299200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 40.2 | 7.9e-13 | 78 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky
Pavir.4NG299200.1.p 78 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 122
789*****************77.*********.*************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MVSMSTTPKP LDSAAANAAA AVAGGGGDDG GGGGKQLPQQ QRMRGAAVMA PPPMAVPAPA 60 AGEEVRKVRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAYVGSK TVIQIRSHAQ 120 KYFLKVQKNG AGEHLPPPRP KRKAAHPYPQ KASKNVSQAV LSQQLPQREQ GSLMSMDTSS 180 AVRDANANSA MPSWDNTPVQ PFSASHVHGA IATNNCSSSI ESPSGTWPTS EAVEQENVVP 240 PLRAMPDFAR VYSFLGSIFD PDTSGHLQRL KAMDPIDVET VLLLMRNLST NLTSPDFEEH 300 LKLLSSCSYG SEGYIKSEGM ENLGSPQSCH LPFMVTSE*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068965 | 0.0 | BT068965.1 Zea mays full-length cDNA clone ZM_BFb0062F11 mRNA, complete cds. |