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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG265600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 470aa MW: 50464.5 Da PI: 6.0163 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.2 | 2.6e-15 | 130 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Pavir.4NG265600.2.p 130 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 189 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.4 | 4.7e-15 | 232 | 283 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Pavir.4NG265600.2.p 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 283 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-17 | 130 | 199 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-12 | 130 | 189 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.53E-21 | 130 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-16 | 131 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-30 | 131 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 131 | 197 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 132 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.53E-23 | 232 | 293 | No hit | No description |
Pfam | PF00847 | 5.9E-10 | 232 | 283 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-18 | 232 | 293 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-18 | 233 | 292 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 233 | 297 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 233 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 273 | 293 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MDMDMSSAYP HHWLSFSLSN NYRHGLLEAF SNSSSAPPLG EEGVVEESPK MEDFLGGVGG 60 AGAPPATAAE DQQLVCGELG SIAAGFLRQY DPAPGAVAEN PGAVTVAMST DAAESDQARR 120 PVETFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEEKAARAY 180 DLAALKYWGP TTTTNFPVSN YEKELEEMKS MTRQEFIASL RRKSSGFSRG ASIYRGVTRH 240 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVESI 300 LNSDLPVGGG AAGRASKFPL DSLPPASAAA MMITGAASQA MPPSEKDYWS LLALHYQQQQ 360 QQQFPASAYE AYGSGGVNVD FTMGTSSHSG SNTSSGVMWG AATTGAMGQQ DSSSNKQGNS 420 GYASNIPYAA AAMVSGSAGY EGSTGNNGTW VTSNTSTAPQ YYNYLFGME* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG265600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040003 | 0.0 | BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812430.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-132 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A3L6PEP0 | 0.0 | A0A3L6PEP0_PANMI; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | Pavir.Db00529.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-126 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG265600.2.p |
Publications ? help Back to Top | |||
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