PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG252600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 438aa    MW: 47200.6 Da    PI: 8.4609
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG252600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17110159155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pavir.4NG252600.2.p 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDQAAIKFRG 159
                          78*******************......55************************997 PP
2AP241.82.7e-13202252155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Pavir.4NG252600.2.p 202 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 252
                          789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16110168IPR016177DNA-binding domain
PfamPF008472.0E-9110159IPR001471AP2/ERF domain
SMARTSM003803.2E-32111173IPR001471AP2/ERF domain
PROSITE profilePS5103217.662111167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17111167IPR001471AP2/ERF domain
CDDcd000184.60E-12111169No hitNo description
SuperFamilySSF541713.27E-17202260IPR016177DNA-binding domain
PfamPF008474.9E-9202252IPR001471AP2/ERF domain
CDDcd000182.84E-24202262No hitNo description
SMARTSM003801.1E-34203266IPR001471AP2/ERF domain
PROSITE profilePS5103215.843203260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17203260IPR001471AP2/ERF domain
PRINTSPR003673.9E-6204215IPR001471AP2/ERF domain
PRINTSPR003673.9E-6242262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAATKRSFHG AVDGIARAVA EHQLQADRQE EGAASRMIFG FPVPGVPTTT RAAAAVTQQF  60
FPATVAAAAP APVPPQATEQ CHVAAAASAA DQWARSASRK SRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DQAAIKFRGV NADINFTLSD YKDEIKKMKN  180
FSKEEFVQVL RRQGAGFVRG SSRFRGVTQH KCGKWEARIG QLMGKKYVYL GLYDTEMEAA  240
QAYDKAAIKC YGKEAVTNFE PQTYDEELQV QSWDGELDLE LSLGCAGSDL STVAVEACSS  300
APSRQRTMTL TLDLPEDDEE TGAGYPHGSI RTMPSPSPGT FRLLPLADDH AHHPGAGGRD  360
DTAHMLQMGQ VGSSGGAAAA HMRWPNGGNN WAPPYATARA DDDDGDAAAA ASSGFPPGQL  420
GRRCRRQQPL AASRPSR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG252600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403460.0BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269410.0KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810716.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotA0A0N7KMH01e-152AP24_ORYSJ; APETALA2-like protein 4
SwissprotB8B0I81e-152AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A3L6RYR20.0A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGPavir.J27340.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-84AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]