PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG252200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 272aa MW: 27754.1 Da PI: 10.1806

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG252200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.1	3.7e-08	183	225	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+aL++e++ l+ + +l +e+ Pavir.4NG252200.1.p 183 RPRKKMRLPEIQQLVRSLSVENDALREEMKALQRACTALSKEN 225 89*************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.2E-5	183	222	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTAVDAEPYA VVATAADIIC SLRGADLAGW TPPWRKGAGA PDLPPACDGS QEAVAEEGDP 60 RGLAWPAVAR GKRSRSRRAG SPSASGSASA SAGPAAVASK EDGRKKKPRR GARGSPASPL 120 DYSGSGASTS GGEDGAFCSQ PAAPAAPAAA AAAAAAAPSS KVGGLAGRRS ILPVPPPRPA 180 GQRPRKKMRL PEIQQLVRSL SVENDALREE MKALQRACTA LSKENGKIET RIDHSSKQNK 240 GKPQHGHERV ATEQDAQNGF VLPDLNLPAD D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	KRSRSR
2	182	188	RPRKKMR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.25039	1e-134	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG252200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054292	3e-67	BT054292.1 Zea mays full-length cDNA clone ZM_BFb0217J09 mRNA, complete cds.
GenBank	KJ728326	3e-67	KJ728326.1 Zea mays clone pUT6607 bZIP transcription factor (bZIP93) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811831.1	1e-128	collagen alpha-1(I) chain-like
TrEMBL	A0A3L6PC00	1e-127	A0A3L6PC00_PANMI; Uncharacterized protein
STRING	Pavir.Da00230.1.p	4e-83	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Pavir.4NG252200.1.p