PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.4NG227300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 212aa MW: 22758.2 Da PI: 10.0334

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG227300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.6	4.5e-15	22	63	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i++k +r+v ++kR+ gilKK +EL LC+a aviifs++ Pavir.4NG227300.1.p 22 IDDKAKRHVALCKRKGGILKKCSELHLLCGAHDAVIIFSKKE 63 99*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.8E-16	12	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.642	12	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	9.28E-19	13	60	No hit	No description
SuperFamily	SSF55455	6.67E-16	13	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-11	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-13	22	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-11	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-11	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTMVKPGKKT SKGRQKIEIR YIDDKAKRHV ALCKRKGGIL KKCSELHLLC GAHDAVIIFS 60 KKEEQAQPQG DGEPPAPTAG GRSSRAGNVF AMGTPSVDHV VRCFAPLPGD EMGVLLPAGA 120 DRAAVEAAAR ELEEAKALVK AGKDRMSAVV EKVQQAAGRR FWWEADVEAL GEAELPDFAR 180 ALQRVRENVQ RVADKQRASA PPAVAAAPWH P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG227300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813488.1	7e-96	agamous-like MADS-box protein AGL62
TrEMBL	A0A2T7DY84	1e-97	A0A2T7DY84_9POAL; Uncharacterized protein
STRING	Pavir.J11792.1.p	1e-149	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2833	30	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-13	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Pavir.4NG227300.1.p