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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG204500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 23330.8 Da PI: 10.2586 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.2 | 1.6e-21 | 20 | 63 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ienk +rqvtfskR++g+lKKA+ELS LC+a av ifs+++kl Pavir.4NG204500.1.p 20 IENKERRQVTFSKRKAGLLKKASELSRLCGAHFAVTIFSEKQKL 63 9*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-22 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.824 | 10 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-19 | 11 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-15 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-20 | 20 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-15 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-15 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVKQEGKKTK GKQVIEIRYI ENKERRQVTF SKRKAGLLKK ASELSRLCGA HFAVTIFSEK 60 QKLPQQGGNE AGKAGSGGNV FAMGTPSVDH VVRCFVPLPG DAGYLPAMDD VAGGAAERAA 120 VEAMVQQTEE TKARVAAEVA RMSAIGAKVL TAAPAGSERF WWEADVEALG EAELPEFARA 180 LQRLRDHVRR HADKLQACNP LPRRPAQTGQ GSLKLA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG204500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813513.1 | 1e-109 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2S3HJB7 | 1e-106 | A0A2S3HJB7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RYQ7 | 1e-108 | A0A3L6RYQ7_PANMI; Agamous-like MADS-box protein AGL62 isoform X3 | ||||
STRING | Pavir.J38547.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-18 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG204500.1.p |