PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG179900.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 683aa    MW: 73758.5 Da    PI: 5.734
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG179900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26193246155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+
  Pavir.4NG179900.5.p 193 RQRVQWPGELHRKFVEAVNQI-GMDRAVPKKILEVMNVDSLTRENVASHLQKYRI 246
                          58*******************.********************************6 PP
2Response_reg77.83.8e-26121211108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                          vl vdD+++ +++l++ l++ +y +v++++d++ al++l+e++    +Dl++ D+ mp++dG++ll+ i  e  ++p+i+++a++e e++
  Pavir.4NG179900.5.p  12 VLAVDDDRVSLMILEKQLKHCNY-NVTTVTDAKTALDMLRERKdvdqFDLVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETV 99 
                          799********************.***************99999999**********************6644.8*************** PP

                          HHHHHTTESEEEESS--HHHHH CS
         Response_reg  87 lealkaGakdflsKpfdpeelv 108
                           + ++ Ga d+l+Kp+  e+l+
  Pavir.4NG179900.5.p 100 MKGINHGACDYLVKPVCLEQLR 121
                          ****************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.2E-399163No hitNo description
SuperFamilySSF521721.99E-349130IPR011006CheY-like superfamily
SMARTSM004481.8E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.70911128IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2312121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.68E-2913121No hitNo description
PROSITE profilePS5129411.51190249IPR017930Myb domain
SuperFamilySSF466891.08E-18190250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-27191250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23194246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MDAGKFPAGM RVLAVDDDRV SLMILEKQLK HCNYNVTTVT DAKTALDMLR ERKDVDQFDL  60
VISDVVMPDI DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVCLEQL  120
RGIWTHVVRN SKCDPRNTIS GGNDVSGQKI QSGDVDKGEK DGENHTRKYS KKKKKDIDCA  180
DEDKENGLST QKRQRVQWPG ELHRKFVEAV NQIGMDRAVP KKILEVMNVD SLTRENVASH  240
LQKYRIFLRK LSEGKLKKSS PFADGPKAWH SDWVPANSNM NVAESSEHYP ELGRYQSAPS  300
LVTSPRSSNL FASMNSPSVL GAHSFLPTQS VQLGSSQRNA CIPRRDTDLA GHGVNLSGAS  360
QCFPSGPGSS FANIPNGVVF NTSKPLSLGI SGSSFANISS DSPPLASSMR FPSPLSGSCY  420
ASILRGKILG ANRGIPFDDI ADGEIQAPSI HLPLHSSELV NQSPDQIQSS FAGLFNQVAR  480
EGHQFAGPSN SWKAAVPSRF PDLSHNVGMS KDPSQGNIVK INQLSRLAAS SGQISIFGNL  540
YQNQIAGTIG KTAPALSFSE QVAPLNFGSN THYTAMPIGN SDLGSSSSTR PSLPNLQIDN  600
SGMPTQILNG EDAIGNHPEG GTINQQAVDD QVINNNEFLV GSSEVQNGAS GDLDEFFADM  660
VDEQNFINNG DAFPCGDWNF AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22189252164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG179900.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.10.0two-component response regulator ORR25-like isoform X1
TrEMBLA0A2T7DWI20.0A0A2T7DWI2_9POAL; Two-component response regulator
STRINGPavir.Db00757.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-80response regulator 12