PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG179900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 683aa MW: 73758.5 Da PI: 5.734 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.5 | 1.1e-26 | 193 | 246 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r++W eLH++Fveav+q+ G ++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+ Pavir.4NG179900.1.p 193 RQRVQWPGELHRKFVEAVNQI-GMDRAVPKKILEVMNVDSLTRENVASHLQKYRI 246 58*******************.********************************6 PP | |||||||
2 | Response_reg | 77.8 | 3.8e-26 | 12 | 121 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 vl vdD+++ +++l++ l++ +y +v++++d++ al++l+e++ +Dl++ D+ mp++dG++ll+ i e ++p+i+++a++e e++ Pavir.4NG179900.1.p 12 VLAVDDDRVSLMILEKQLKHCNY-NVTTVTDAKTALDMLRERKdvdqFDLVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETV 99 799********************.***************99999999**********************6644.8*************** PP HHHHHTTESEEEESS--HHHHH CS Response_reg 87 lealkaGakdflsKpfdpeelv 108 + ++ Ga d+l+Kp+ e+l+ Pavir.4NG179900.1.p 100 MKGINHGACDYLVKPVCLEQLR 121 ****************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.2E-39 | 9 | 163 | No hit | No description |
SuperFamily | SSF52172 | 1.99E-34 | 9 | 130 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.8E-30 | 10 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.709 | 11 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.6E-23 | 12 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.68E-29 | 13 | 121 | No hit | No description |
PROSITE profile | PS51294 | 11.51 | 190 | 249 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-18 | 190 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 191 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 194 | 246 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MDAGKFPAGM RVLAVDDDRV SLMILEKQLK HCNYNVTTVT DAKTALDMLR ERKDVDQFDL 60 VISDVVMPDI DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVCLEQL 120 RGIWTHVVRN SKCDPRNTIS GGNDVSGQKI QSGDVDKGEK DGENHTRKYS KKKKKDIDCA 180 DEDKENGLST QKRQRVQWPG ELHRKFVEAV NQIGMDRAVP KKILEVMNVD SLTRENVASH 240 LQKYRIFLRK LSEGKLKKSS PFADGPKAWH SDWVPANSNM NVAESSEHYP ELGRYQSAPS 300 LVTSPRSSNL FASMNSPSVL GAHSFLPTQS VQLGSSQRNA CIPRRDTDLA GHGVNLSGAS 360 QCFPSGPGSS FANIPNGVVF NTSKPLSLGI SGSSFANISS DSPPLASSMR FPSPLSGSCY 420 ASILRGKILG ANRGIPFDDI ADGEIQAPSI HLPLHSSELV NQSPDQIQSS FAGLFNQVAR 480 EGHQFAGPSN SWKAAVPSRF PDLSHNVGMS KDPSQGNIVK INQLSRLAAS SGQISIFGNL 540 YQNQIAGTIG KTAPALSFSE QVAPLNFGSN THYTAMPIGN SDLGSSSSTR PSLPNLQIDN 600 SGMPTQILNG EDAIGNHPEG GTINQQAVDD QVINNNEFLV GSSEVQNGAS GDLDEFFADM 660 VDEQNFINNG DAFPCGDWNF AP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 189 | 252 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG179900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812920.1 | 0.0 | two-component response regulator ORR25-like isoform X1 | ||||
TrEMBL | A0A2T7DWI2 | 0.0 | A0A2T7DWI2_9POAL; Two-component response regulator | ||||
STRING | Pavir.Db00757.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13504 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-80 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG179900.1.p |