PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG169000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 660aa    MW: 76582.3 Da    PI: 7.3417
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG169000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.26.7e-2411108189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn+YA+++GFs+r+++s++sk+ +e tk+ +vC+k g +++ek +          +++rr+  ++rt+C a++ v+k++ g+wev ++
  Pavir.4NG169000.1.p  11 DYYNSYARHTGFSIRIDTSRESKKANEKTKYIYVCQKAGVNKKEKVAddgpitekkIVRQRRSDYVDRTHCPACMIVRKTSPGHWEVVNF 100
                          69*****************************************99999****998888999999************************** PP

                 FAR1  82 eleHnHel 89 
                          e eHnHe+
  Pavir.4NG169000.1.p 101 EREHNHEC 108
                          ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-2211108IPR004330FAR1 DNA binding domain
PfamPF105512.8E-29231325IPR018289MULE transposase domain
PROSITE profilePS509669.52519555IPR007527Zinc finger, SWIM-type
SMARTSM005757.9E-4530557IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-5531554IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MYFNTSDAAK DYYNSYARHT GFSIRIDTSR ESKKANEKTK YIYVCQKAGV NKKEKVADDG  60
PITEKKIVRQ RRSDYVDRTH CPACMIVRKT SPGHWEVVNF EREHNHECLR KFSLTKYLKS  120
HRDIPAEEKE FIKLLHGCCI TTTRAYQIMA ELYGGIENCL YTEGDAKNLR VEYRAEYRGK  180
DVKAALEYIE ELKKKDPEFY YSYTLDEFDR VENMFWVDGA ARRAYELYSD CLSFDTTYLT  240
NAYNMPCAPF IGIDRNGITI QLGCGFLRNE KTEGFVLLFT EFKKAMGGKD PTNIISDQDI  300
AMKAAIAEVF VSSVHRNCRW HIMENARKTM GPFLDSKGDG KQELADDFKD CIDNSFTLAE  360
FEQKWQAFLD KYELNNDERF QHLYDMRHCW IPEYFMHCFF PFLQTIARSE GFNAVLKRYV  420
NPKNSILNFV QQYKKIEQRI FSKQDLQEAA TATKVPHYLT GHPMEHQMKK AYTRRLFNVF  480
QHELQLSSSY YVVRVEGDDL IDVVPYRHCP DLLYGTRTFR VMSSRVEGLY SCTCCKFERD  540
GVLCCHILKV FDALVVREVP DRYILPRWSV EPVVDSGVEI AANEPLQEAQ ITDHGKHVIR  600
YSSMCTNFNK IVRPFIADDE GYAIVSKQVS ALQSKLVALG KRRASSVLPG LECEQVDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.307531e-120callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG169000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SLU80.0A0A3L6SLU8_PANMI; Uncharacterized protein
STRINGPavir.Ia02474.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-91FAR1-related sequence 5