PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG141700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 401aa    MW: 42771.6 Da    PI: 7.6065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG141700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05129150223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp Cgk F++  ++  H+r+H
  Pavir.4NG141700.1.p 129 ECPECGKFFKNDKSMFGHLRSH 150
                          6*******************99 PP
2zf-C2H212.20.00057271293123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C++C++ Fs++  L  H+  H
  Pavir.4NG141700.1.p 271 YVCKHCKEEFSTHQALGGHMAGH 293
                          9*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263128155IPR007087Zinc finger, C2H2
SuperFamilySSF576678.96E-9129150No hitNo description
PfamPF139120.0037129150IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576678.96E-9266293No hitNo description
Gene3DG3DSA:3.30.160.609.4E-4267297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1271294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367271298IPR007087Zinc finger, C2H2
PfamPF139121.3E-7271295IPR007087Zinc finger, C2H2
PROSITE patternPS000280273294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSKGSLLWLC SLVLLQVCIA QLSLISGSQL TGGQIGGNLL CQDPIRRAWL MSRHGHDAFG  60
GHSADVISDE ELADEGVNTS DGEYTSDDRG MPVAVGEAGV EEEEGLLRSD GDDDGGGTKD  120
CSGSGGDVEC PECGKFFKND KSMFGHLRSH PNRGYKGATP PVRKLKLSPE TAAASSSSSS  180
RDNKQATQVP PPPPSSSFRK PDAIGQAEGG IRGSAAAKIK GNNAGNVGNY GEHSSSFVKI  240
PKKRRNVPKE VSEAHRKKAK LVPTLKEKRP YVCKHCKEEF STHQALGGHM AGHHREKKVP  300
AHRISMAAES QSAKQQVGGG DEDGNRWRDN DLSPPGLLSE QFSMVVGMPW QRGQASGGQM  360
RQHSERNDGL SPAPTPPLTD DAAGRRLFNI DLNVKAPEQE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG141700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.10.0uncharacterized protein LOC112890871
TrEMBLA0A2S3HJM70.0A0A2S3HJM7_9POAL; Uncharacterized protein
STRINGPavir.Da01512.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-06C2H2-like zinc finger protein