 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.4NG128900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRF |
| Protein Properties |
Length: 318aa MW: 33691.6 Da PI: 9.0527 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.4NG128900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 76.9 | 2e-24 | 85 | 128 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg+srsrk++e
Pavir.4NG128900.1.p 85 DPEPGRCRRTDGKKWRCSREAHGDSKYCEKHIHRGKSRSRKPVE 128
79***************************************998 PP
|
| 2 | QLQ | 61 | 3.2e-21 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
FTa+Q+q+L++Q+l+yKy+a+++PvP++L+++++
Pavir.4NG128900.1.p 12 LFTASQWQELEHQALIYKYMASGAPVPHDLVLPLR 46
5*******************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MMLSGHGGGR RLFTASQWQE LEHQALIYKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP 60
PQTSPSLGYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR CSREAHGDSK YCEKHIHRGK 120
SRSRKPVEAV ASSATAGYRP SALSISPPRA PDAAPGFGHH QQQPHHGASS ARAPAHQAAA 180
GAPLQLHLDA SLHAASPPPS YHRYAHAHYA PPPPFPGGYG HAQAKELQDA ELRRRHYLAL 240
GADLSLDKPP AAAAGGQDAA AGAEKPLRLF FDEWPREGGD ARPWTVGAED ATQLSISIPA 300
ASPSDLAAAA ARYHNGE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT040071 | 0.0 | BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds. |
| GenBank | BT041540 | 0.0 | BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds. |
| GenBank | BT055390 | 0.0 | BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds. |
| GenBank | EF515850 | 0.0 | EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds. |
| GenBank | JX469985 | 0.0 | JX469985.1 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds. |
